You can take a train from Malpensa Terminal 1 to Como Nord Lago Station via Malpensa Aeroporto T.1 and Saronno in around 1h 15m. Alternatively, FlixBus operates a bus from Malpensa Airport - Milan to Como once daily. Tickets cost $7 - $11 and the journey takes 1h 5m.
assuming that your airport is MAlpensa, you take a train from airport to Saronna (I think its Saronna). Change trains for Como Lago Nord station. Do a google search for 'Le Nord'. You can go from Malpensa to Milan Centrale by bus and then train to Como San Giovanni station but the 'Le Nord' route is what most people appear to do.
The journey time between Malpensa Airport T2 and Lago di Como is around 3h 23m and covers a distance of around 90 km. This includes an average layover time of around 1h 1m. Operated by FlixBus, ASF Autolinee srl and Gestione Navigazione Laghi Italia, the Malpensa Airport T2 to Lago di Como service departs from Milan and arrives in Varenna.
There are several airports around Lake Como; however, Milan Malpensa International Airport (MXP) is the nearest airport to Lake Como. However, depending on the changeover time, the trip by train from Malpensa to Lake Como can take up to two hours. Therefore, a private transfer is the quickest way to arrive from Malpensa Airport to Lake Como.

Milan Malpensa Airport to Como Lago by train. It takes an average of 1h 18m to travel from Milan Malpensa Airport to Como Lago by train, over a distance of around 22 miles (36 km). There are normally 32 trains per day travelling from Milan Malpensa Airport to Como Lago and tickets for this journey start from £10.12 when you book in advance.

However, it is slightly farther from the lake than Como Nord Lago station. The journey takes about one hour, and five trains depart from Milan to Como Lago a day. The train from Milan to Lake Como costs around €4 to €5 each way. So traveling by train to Como Nord Lago station or Como San Giovanni is one of the most affordable methods of
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como nord lago to malpensa airport